Journal: bioRxiv
Article Title: Powassan Viruses Spread Cell to Cell During Direct Isolation from Ixodes Ticks and Persistently Infect Human Brain Endothelial Cells and Pericytes
doi: 10.1101/2021.09.30.462684
Figure Lengend Snippet: (A) POWV-LI9 was pretreated with WGA (1 μg/mL) for 5 min. Control mock WGA treated media (1 μg/mL), or WGA treated POWV was adsorbed to hBMECs for 1 hour, and subsequently cells were PBS washed resupplemented with EBM2-5% FBS media and grown for 1-3 days. Total cellular RNA from mock-WGA-treated and WGA-treated POWV infected hBMECs was harvested in RLT buffer, purified, DNAse treated and subjected to Affymetrix array analysis. Log 2 -induced genes from POWV-infected samples were compared to respective mock-infected time points, generating a heatmap with 0-to 100-fold induction scale, where induced genes above 100-fold were in black. Genes were separated into functional categories as chemokines, interferons (IFN), ISGs, IRFs, cytokines (Cytok.), transcriptional factors (TFs), apoptosis-related genes (Apop.), and ISGylation (ISGyl.) genes. (B) Selected genes from the Affymetrix array analysis were confirmed by qRT-PCR. (C) Total RNA from mock- and POWV-infected hPCs was isolated at 1-3 dpi and submitted to Affymetrix array analysis as in A. Log 2 -induced genes from POWV-infected samples were compared against its respective mock-infected timepoint, generating a heatmap with 0-to 500-fold (left graph) or 100-fold (right graph) induction scale, where induced genes above 500- or 100-fold were represented as black color. Genes were separated in functional categories as chemokines, interferons (IFN), ISGs, IRFs, cytokines (Cytok.), transcriptional factors (TFs), apoptosis-related (Apop.), ISGylation-related (ISGyl.), and complement related genes. (D) Selected genes induced by POWV infection of pericytes by Affymetrix array were confirmed by qRT-PCR. (E) Gene Ontology (GO) enrichment analysis was conducted by querying the upregulated genes from infected hBMECs or hPCs 1, 2, and 3 dpi using STRING v11 . GO terms from selected biological processes were presented.
Article Snippet: Human brain vascular pericytes (hPCs - passage 1) were purchased from ScienCell (#1200) and grown in pericyte medium (PM, #1201) supplemented with pericyte growth supplement (#1252) and incubated at 37°C and 5% CO 2 .
Techniques: Infection, Purification, Functional Assay, Quantitative RT-PCR, Isolation